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SVbyEye #3591

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daewoooo opened this issue Sep 26, 2024 · 1 comment
Open

SVbyEye #3591

daewoooo opened this issue Sep 26, 2024 · 1 comment
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1. awaiting moderation submitted and waiting clearance to access resources Post Release Deadline package submitted after posted deadline. reviewer will only review if time allows

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@daewoooo
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Update the following URL to point to the GitHub repository of
the package you wish to submit to Bioconductor

Confirm the following by editing each check box to '[x]'

  • [ x] I understand that by submitting my package to Bioconductor,
    the package source and all review commentary are visible to the
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  • [ x] I have read the Bioconductor Package Submission
    instructions. My package is consistent with the Bioconductor
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  • [x ] My package addresses statistical or bioinformatic issues related
    to the analysis and comprehension of high throughput genomic data.

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@bioc-issue-bot
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Hi @daewoooo

Thanks for submitting your package. We are taking a quick
look at it and you will hear back from us soon.

The DESCRIPTION file for this package is:

Package: SVbyEye
Title: Visualization of genomic structural variants
Version: 0.99.0
Authors@R: 
    person(given = "David",
 family = "Porubsky",
 role = c("aut", "cre"),
 email = "[email protected]",
 comment = c(ORCID = "0000-0001-8414-8966"))                 
Description: SVbyEye is an implements functions to detect and visualize genomic structural variation between two and multiple sequences.
  To achieve this, SVbyEye introduces 4 new ggplot2 geoms (geom_miropeats(), geom_arrowhead(), geom_roundrect(), and geom_wide_arc()) together
  with a number of other functions simplify oparations on FASTA alignments reported PAF format. A number of wrapper functions allows user to
  produce near publication ready figures.
Depends:
  R (>= 4.3.0)
Imports:
  ggplot2 (>= 3.4.0),
  ggnewscale,
  ggforce,
  gggenes,
  scales,
  grid,
  stats,
  dplyr,
  stringr,
  magrittr,
  data.table,
  S4Vectors,
  methods,
  tibble,
  utils,
  BSgenome,
  GenomicRanges,
  GenomicAlignments (>= 1.34.0),
  Biostrings,
  IRanges,
  GenomeInfoDb,
  Rsamtools,
  wesanderson,
  randomcoloR
Suggests:
  BSgenome.Hsapiens.UCSC.hg38,
  BiocStyle,
  testthat,
  knitr,
  gtools,
  rmarkdown
License: MIT + file LICENSE
Encoding: UTF-8
LazyLoad: yes
VignetteBuilder: knitr
biocViews: Software, GenomicVariation, StructuralVariation, VariantDetection, GenomeAnnotation, ComparativeGenomics, Sequencing, WholeGenome
URL: https://github.com/daewoooo/SVbyEye
BugReports: https://github.com/daewoooo/SVbyEye/issues
RoxygenNote: 7.3.2

@bioc-issue-bot bioc-issue-bot added the 1. awaiting moderation submitted and waiting clearance to access resources label Sep 26, 2024
@lshep lshep added the Post Release Deadline package submitted after posted deadline. reviewer will only review if time allows label Oct 10, 2024
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