From 8d469b853b0658b88050031d1627ce4627c01b3c Mon Sep 17 00:00:00 2001 From: msguixe <56801139+msguixe@users.noreply.github.com> Date: Tue, 22 Oct 2024 14:30:08 +0200 Subject: [PATCH] Create Datasets_BBGLAB.md Created the page about the spreadsheet with the list of all the datasets used in the lab, including all links and descriptions. --- docs/Datasets/Datasets_BBGLAB.md | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) create mode 100644 docs/Datasets/Datasets_BBGLAB.md diff --git a/docs/Datasets/Datasets_BBGLAB.md b/docs/Datasets/Datasets_BBGLAB.md new file mode 100644 index 00000000..6b188233 --- /dev/null +++ b/docs/Datasets/Datasets_BBGLAB.md @@ -0,0 +1,21 @@ +# Datasets - BBGLab + +In the BBG Lab we have a [google spreadsheet](https://docs.google.com/spreadsheets/d/10eVPI8X9dObmSdypmcID0DTxO1XW8h3AGHbm_IT0El8/edit?usp=sharing) that contains all the information about the datasets we use. + +## Description +This spreadheet contains 4 sheets: +- **External**: This table contains information about all the external datasets (related to sample sequencing data) used in the BBG Lab. It includes downloaded datasets (and the path to the cluster where you can find it) as well as datasets of which we have access through a cloud or external connection (e.g. Genomics England, UKbiobank). +- **Internal**: This table contains information about all the internal datasets sequenced at the BBG Lab (e.g. samples from patients from Sant Joan de Déu). +- **Form External**: This table contains new external datasets added by any BBG user. You can [add new external datasets using this form](https://forms.gle/dBAJD3wZV2MyvVx79). New datasets will be added as new rows. +- **Form Internal**: This table contains new internal datasets added by any BBG user. You can [add new internal datasets using this form](https://forms.gle/HExJEwgjRvW7angNA). New datasets will be added as new rows. + +The idea is to have a table with the minimum information necessary to identify the dataset, so the table is realistically maintainable. Each user can search for more detailed information just by going to the path where the data is located in the cluster, by looking at the original online repository or simply by asking the BBG user of the specific dataset. + +This spreadsheet can only be modified by Mònica, Martina and Paula. If you know about a dataset that is not included in the spreadsheet, you can use the forms to add them. Mònica, Martina and Paula will review the new datasets and add them in the main tables. + +To add new datasets, it is only mandatory to write the name of the dataset (as descriptive as possible) and the user e-mail. Mònica, Martina and Paula will try to find the rest of the information. + +## Reference +Mònica Sánchez Guxé\ +Martina Gasull\ +Paula Gomis