You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
version of RNA-Bloom with java -jar RNA-Bloom.jar -version
RNA-Bloom v2.0.1
version of java with java -version
openjdk version "18.0.1" 2022-04-19
exact command used to run RNA-Bloom
rnabloom -long ${FILE} -t 48 -outdir ${NAME}
Hi Ka Ming,
I'm using RNA-bloom2 to assemble long-read cDNA RNA-seq data. I have a question about the output. I can see the transcripts.fa files have the sequences for each transcripts, but how can I know which transcripts are from the same gene?
I don't see that information contained in the header. Some example headers are shown here:
path indicates that it was assembled from the list of sequences from the previous step of the assembly. s indicates that it originate from a single sequence.
Please report
java -jar RNA-Bloom.jar -version
RNA-Bloom v2.0.1
java -version
openjdk version "18.0.1" 2022-04-19
rnabloom -long ${FILE} -t 48 -outdir ${NAME}
Hi Ka Ming,
I'm using RNA-bloom2 to assemble long-read cDNA RNA-seq data. I have a question about the output. I can see the
transcripts.fa
files have the sequences for each transcripts, but how can I know which transcripts are from the same gene?I don't see that information contained in the header. Some example headers are shown here:
Also, I'm not sure why some header show
s
while others showpath
, any difference?Thank you so much if you could help to explain it.
Cheers,
Alex
The text was updated successfully, but these errors were encountered: