The format is based on Keep a Changelog and this project adheres to Semantic Versioning.
- #167 Updated template to nf-core/tools v2.12
- #162 Updated template to nf-core/tools v2.11
- #163 Updated template to nf-core/tools v2.11.1
- #148 Update CODEOWNERS to use GitHub teams
- #127 Add
singularity.registry = 'quay.io'
and bump NF version to 23.04.0 - #140 Make it possible to skip MultiQC, fix error raising
- #145 Fix MultiQC report generation
- #152 Close #150
- #157 Fix bcl2fastq and bclconvert publishDir
- #158 Update all modules
- #130 Remove
public_aws_ecr
profile.
- #125 Move containers for pipeline to quay.io
- #103
-profile test
failing due to relative path inflowcell_input.csv
- #122 Fails gracefully if an error is encountered
- Add
public_aws_ecr
profile for using ECR containers. - Bump
fastp
module to v0.23.4
- #115 Add public_aws_ecr profile
- #94 update documentation
- #95 add Codeowners
- #108 update modules (untar is now in bcl2fastq and bclconvert modules)
- #63 Replace local bcl_demultiplex subworkflow with nf-core version (@matthdsm)
- #63 Add bases_demultiplex local subworkflow (@matthdsm)
- #63 Replace fastqc with falco for speedier QC, fixes Replace fastqc with falco #62 (@matthdsm)
- #64 Add subway map by @nvnieuwk
- #70 Make tools and trimming optional (@matthdsm)
- #71 Add nf-test (@edmundmiller)
- #78 Nextflow minimal version is now
22.10.1
- #63 Fix MultiQC report inputs, fixes MultiQC report is empty (@matthdsm)
- #67 Enable institutional configs (@edmundmiller)
- #83 Fix skip_tools (@glichtenstein)
- #80 When NoLaneSplitting is true the process fails because of a glob. See nf-core/modules #2745. (@matthdsm)
- #79 Update link in docs to samplesheet (@glichtenstein & @edmundmiller)
Initial release of nf-core/demultiplex, created with the nf-core template.