DESCRIPTION

Package: microbiomeComputations
Title: Compute Results for Microbiome Analyses
Version: 5.1.3
Authors@R: 
    c(person(given = "Danielle",
           family = "Callan",
           role = c("aut", "cre"),
           email = "dcallan@upenn.edu"),
      person(given = "Ann",
           family = "Blevins",
           role = "aut",
           email = "annsize@upenn.edu"))
Imports:
    ape,
    data.table,
    DESeq2,
    jsonlite,
    Maaslin2,
    methods,
    purrr,
    Rcpp (>= 0.11.0),
    S4Vectors,
    SpiecEasi,
    stringi,
    vegan,
    veupathUtils,
Depends:
    R (>= 2.10)
Remotes:
    microbiomeDB/veupathUtils
LinkingTo: Rcpp
URL: https://github.com/microbiomeDB/microbiomeComputations, https://microbiomedb.github.io/microbiomeComputations/
BugReports: https://github.com/microbiomeDB/microbiomeComputations/issues
Description: microbiomeComputations provides helper functions for performing common analyses on microbiome data. The results are available as json, or optionally in a `data.table`. This package is intended to be compliant with the API specified in VEuPathDB/service-eda-compute.
License: Apache License (>= 2)
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
Suggests: 
    testthat (>= 3.0.0)
Config/testthat/edition: 3
Collate: 
    'RcppExports.R'
    'class-AbundanceData.R'
    'class-AbsoluteAbundanceData.R'
    'class-Comparator.R'
    'method-alphaDiv.R'
    'method-betaDiv.R'
    'method-correlation.R'
    'method-differentialAbundance.R'
    'method-rankedAbundance.R'
    'methods-AbundanceData.R'
    'methods-Comparator.R'
    'methods-json.R'
    'microbiomeComputations-package.R'
    'utils.R'