From 87dfd9e90e93a05041d84414ad3cf6f6f6b276fe Mon Sep 17 00:00:00 2001 From: Paolo Di Tommaso Date: Sun, 19 May 2024 20:13:12 +0200 Subject: [PATCH] Bump bioconda prefix to conda packages Signed-off-by: Paolo Di Tommaso --- modules/fastqc/main.nf | 2 +- modules/index/main.nf | 2 +- modules/multiqc/main.nf | 2 +- modules/quant/main.nf | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/modules/fastqc/main.nf b/modules/fastqc/main.nf index b9009cd..57c0477 100644 --- a/modules/fastqc/main.nf +++ b/modules/fastqc/main.nf @@ -2,7 +2,7 @@ params.outdir = 'results' process FASTQC { tag "FASTQC on $sample_id" - conda 'fastqc=0.12.1' + conda 'bioconda::fastqc=0.12.1' publishDir params.outdir, mode:'copy' input: diff --git a/modules/index/main.nf b/modules/index/main.nf index de55e46..72187c8 100644 --- a/modules/index/main.nf +++ b/modules/index/main.nf @@ -1,7 +1,7 @@ process INDEX { tag "$transcriptome.simpleName" - conda 'salmon=1.10.2' + conda 'bioconda::salmon=1.10.2' input: path transcriptome diff --git a/modules/multiqc/main.nf b/modules/multiqc/main.nf index 6457096..c9fbac8 100644 --- a/modules/multiqc/main.nf +++ b/modules/multiqc/main.nf @@ -1,7 +1,7 @@ params.outdir = 'results' process MULTIQC { - conda 'multiqc=1.17' + conda 'bioconda::multiqc=1.17' publishDir params.outdir, mode:'copy' input: diff --git a/modules/quant/main.nf b/modules/quant/main.nf index 8459597..a873ddb 100644 --- a/modules/quant/main.nf +++ b/modules/quant/main.nf @@ -1,7 +1,7 @@ process QUANT { tag "$pair_id" - conda 'salmon=1.10.2' + conda 'bioconda::salmon=1.10.2' input: path index