Error in RunPCA: "You're computing too large a percentage of total singular values, use a standard svd instead.did not converge--results might be invalid!; try increasing work or max it" #4567
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Thank you very much for your help!
Before regression of cc.difference:
After regression of cc.difference as above:
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Why are you only using the cell cycle genes to run PCA here? You see this warning because you're trying to compute the top 50 PCs using only 35 genes as input (which is impossible). The warning tells you that it's instead computing the top 35 PCs. |
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Why are you only using the cell cycle genes to run PCA here?
You see this warning because you're trying to compute the top 50 PCs using only 35 genes as input (which is impossible). The warning tells you that it's instead computing the top 35 PCs.