How to export the RNA expression data of the clustered cells

[Madeinheavena]

I have performed this command in R and this is the step I did(below)

SCGM_0d <- FindNeighbors(SCGM_0d, dims = 1:30)
SCGM_0d <- RunUMAP(SCGM_0d, dims = 1:30)
SCGM_0d <- RunTSNE(SCGM_0d, dims = 1:30)
SCGM_0d <- FindClusters(SCGM_0d, resolution = 0.25)
saveRDS(SCGM_0d, file = "SCGM_0d-clean-data-Normalizetion-PCA-UMAP-SNE.rds")

I get this rds and I want to get the RNA expression data of two clustered cells from the rds file,

but I dont konw how to get the data and export it.
help please!

[timoast]

You can extract data from the Seurat object using the GetAssayData() function. See documentation here: https://rdrr.io/cran/SeuratObject/man/AssayData.html

You can also find the average expression of each gene for groups of cells using the AverageExpression() function

[Madeinheavena]

Thank you very much!