Computational Mass Spectrometry @ Pacific Northwest National Laboratory
- 86 followers
- Richland, WA
- https://omics.pnl.gov/software/
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Thermo-Raw-File-Reader
Thermo-Raw-File-Reader Public.NET DLL wrapper for reading Thermo .Raw files. Uses ThermoFisher.CommonCore NuGet packages provided by Thermo Fisher Scientific
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Informed-Proteomics
Informed-Proteomics PublicTop down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data
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DeconTools
DeconTools PublicUsed to deisotope mass spectra and to detect features from mass spectrometry data using observed isotopic signatures.
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DB-Schema-Export-Tool
DB-Schema-Export-Tool PublicExports SQL Server and Postgres database objects as schema files. Exported objects include tables, views, stored procedures, and functions, plus also database properties including database roles an…
Repositories
- proteomics_therapy Public
Collection of lessons from IO group's data analysis workshops (i.e. TheRa.py Sessions)
PNNL-Comp-Mass-Spec/proteomics_therapy’s past year of commit activity - PHRP Public
Converts a MS-GF+ .tsv search result file or an X!Tandem results file (XML format) into a series of tab-delimited text files, summarizing the results. It also supports results files from MaxQuant, MSAlign, TopPIC, MODa, MODPlus, and MSPathFinder, along with SEQUEST Synopsis/First Hits files.
PNNL-Comp-Mass-Spec/PHRP’s past year of commit activity - PNNL.DIA.utils Public
**WORK IN PROGRESS** misc. functions for DIA proteomics data analysis and parsing to MSnSet objects
PNNL-Comp-Mass-Spec/PNNL.DIA.utils’s past year of commit activity - PRISM-Class-Library Public
The PRISM Class Library is a collection of routines used by many of the software tools that support the Data Management System at PNNL.
PNNL-Comp-Mass-Spec/PRISM-Class-Library’s past year of commit activity - DMS-Organism-Database-Handler Public
Organism Database (FASTA file) programs, including PRISMSeq Uploader and the FastaFileMaker console application
PNNL-Comp-Mass-Spec/DMS-Organism-Database-Handler’s past year of commit activity