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47 Open 66 Closed
47 Open 66 Closed
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Issues list

Running partial workflow
#121 opened Jan 17, 2024 by AroneyS
@fasnicar
1
Trouble running example 2 - Tree of Life
#120 opened Dec 1, 2023 by sierra-smith
The generated phylogenetic tree is missing MAGs at the leaf nodes.
#119 opened Nov 25, 2023 by ylei14
broken link on wiki
#118 opened Nov 16, 2023 by jorondo1
Reducing number of RAxML threads to 20, as it appears to underperform with more threads help wanted Extra attention is needed
#117 opened Nov 11, 2023 by ylei14
@fasnicar
2
What is the difference between "phylophlan" database and "SGB.XXX"?
#116 opened Oct 3, 2023 by augfranco93
2
[e] gene_markers_identification crashed
#115 opened Sep 19, 2023 by kaw97
@fasnicar
1
RAxML can't parse alignments for which there are sequences made entirely of undetermined characters
#113 opened Jun 30, 2023 by RyanCook94
1
UnboundLocalError: cannot access local variable 'uniprotkb2uniref90' where it is not associated with a value
#111 opened May 28, 2023 by chennyhui
Mapping with Diamond v2 seems slow
#110 opened May 23, 2023 by ganiatgithub
1
maybee update taxa2core_cpa* to recent uniprot release
#109 opened May 11, 2023 by EricDeveaud
[e] No alignments found to concatenate
#104 opened Feb 24, 2023 by jwkkang
@fasnicar
1
Phylophlan Error
#103 opened Feb 16, 2023 by afedynak
@fasnicar
3
FastTreeMP returned non-zero exit status 1.
#102 opened Oct 21, 2022 by gabridinosauro
@fasnicar
8
mach-o file, but is an incompatible architecture (have 'x86_64', need 'arm64')
#101 opened Oct 19, 2022 by PabloArrow
@fasnicar
1
Seems unable to find input faa files
#100 opened Oct 13, 2022 by ganiatgithub
@fasnicar
1
Error: returned non-zero exit status 2
#99 opened Sep 11, 2022 by GriffyGe
@fasnicar
1
Bootstrap error obtained. zsh: killed
#97 opened Aug 12, 2022 by pavlo888
@fasnicar
1
set.py long description file name variation
#95 opened Jul 7, 2022 by erinpnewcomer
@fasnicar
1
uniprot database differing number of markers
#93 opened Jun 20, 2022 by pavlo888
@fasnicar
4
Error while running S aureus example
#92 opened Jun 20, 2022 by rajneeshdadwal
@fasnicar
1
where is the log file
#90 opened May 25, 2022 by pavlo888
@fasnicar
3
Error running Phylophlan
#88 opened Apr 16, 2022 by rybioinf
@fasnicar
3
Feature proposal: tqdm progressbar during execution of phylophlan enhancement New feature or request
#85 opened Mar 29, 2022 by valentynbez
The download of reference genomes
#84 opened Mar 22, 2022 by lipumpkin
@fasnicar
2
ProTip! Follow long discussions with comments:>50.