VS-1506 - Pull changes from EchoCallset into ah_var_store branch #4700

Job	Run time
Validate script WDLs using womtools	54s
Validate generated WDLs using womtools	13m 20s
build and push gatk docker to artifacts	34m 38s
check if the environment has privileges	1s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	43m 45s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	44m 1s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	40m 39s
WDL test RUN_M2_WDL on cromwell	37m 57s
WDL test RUN_CNN_WDL on cromwell	29m 3s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	27m 36s
Java 17.0.6+10 build and test cloud	19m 39s
Java 17.0.6+10 build and test integration	33m 20s
Java 17.0.6+10 build and test unit	20m 44s
Java 17.0.6+10 test on docker integration	37m 56s
Java 17.0.6+10 test on docker unit	23m 32s
Java 17.0.6+10 test on docker variantcalling	32m 46s
Java 17.0.6+10 test on docker conda	29m 48s
	7h 49m 39s

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