VS-1490 - Refactor python code from extract dir into a scripts directory. #4814

Job	Run time
Validate script WDLs using womtools	54s
build and push gatk docker to artifacts	46m 56s
Validate generated WDLs using womtools	13m 34s
check if the environment has privileges	1s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	53m 37s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	53m 18s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	56m 30s
WDL test RUN_M2_WDL on cromwell	48m 22s
WDL test RUN_CNN_WDL on cromwell	41m 9s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	34m 58s
Java 17.0.6+10 build and test cloud	27m 0s
Java 17.0.6+10 build and test integration	33m 25s
Java 17.0.6+10 build and test unit	20m 21s
Java 17.0.6+10 test on docker integration	39m 22s
Java 17.0.6+10 test on docker unit	22m 48s
Java 17.0.6+10 test on docker variantcalling	34m 10s
Java 17.0.6+10 test on docker conda	29m 40s
	9h 16m 5s

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