4.1.8.1
Download release: gatk-4.1.8.1.zip
Docker image: https://hub.docker.com/r/broadinstitute/gatk/
Highlights of the 4.1.8.1 release:
-
This is a minor point release intended primarily to push out a needed enhancement to the
Mutect2
pipeline. -
This release also introduces a new framework for the auto-generation of WDLs for GATK/Picard tools. Over the next several GATK releases, we intend to hook GATK/Picard tools up to the new WDL generator, with the ultimate goal of having WDLs automatically published for all tools with each release.
Full list of changes:
-
Mutect2
- We now allow for the passing of additional arguments to
GetPileupSummaries
from theMutect2
WDL (#6713)
- We now allow for the passing of additional arguments to
-
GATK Engine
- Added a new framework for the auto-generation of WDLs for GATK/Picard tools (#6504)
- Over the next several GATK releases, we intend to hook GATK/Picard tools up to the new WDL generator, with the ultimate goal of having WDLs automatically published for all tools with each release
- Added a new framework for the auto-generation of WDLs for GATK/Picard tools (#6504)
-
Bug Fixes
-
Miscellaneous Changes
- Removed a few GATK classes that are redundant with Picard classes. (#6678)
-
Documentation
-
Dependencies
- Updated HTSJDK to
2.23.0
(#6702)
- Updated HTSJDK to