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27 Open 34 Closed
27 Open 34 Closed
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Issues list

CWL steps given in alphabetical order rather than the order in the CWL file
#326 opened Oct 19, 2024 by Ambivalentalfa
new command: cwl-summary
#314 opened Aug 19, 2024 by mr-c
Parser does not support cwltool extensions
#309 opened Jul 16, 2024 by stxue1
cwl-graph-split causes some odd errors for a packed pipeline
#286 opened Feb 13, 2024 by alexiswl
ruamel.yaml doesn't support yaml.dump()
#285 opened Feb 13, 2024 by alexiswl
1
1
Proposal for a Function to Generate JSON Schema for Workflow Parameter Files
#273 opened Jan 14, 2024 by suecharo
3
Inconsistent type attribute in CommandInputParameter
#271 opened Dec 19, 2023 by camilovelezr
New tests needed to catch future regressions
#260 opened Nov 13, 2023 by mr-c
test & support apptainer in addition to singularity-ce
#185 opened Nov 28, 2022 by mr-c
test __eq__ & __hash__ with load/save of all CWL conformance tests
#168 opened Sep 13, 2022 by mr-c
add utilities to help with parsing CWL Parameter References
#162 opened Sep 8, 2022 by mr-c
1
docker_extract.py is not handling relative directories very well.
#157 opened Sep 1, 2022 by golharam
1
TypeError: 'NoneType' object is not callable in NodeJSEngine.__del__()
#137 opened Aug 3, 2022 by mr-c
[Feature Request] utility function to access nested fields
#106 opened Oct 2, 2021 by tom-tan
1
new feature: implement cwltool --target / --single-{step,process} --print-{subgraph,target}
#92 opened Sep 4, 2021 by mr-c
Subtree of workflow is updated only to v1.1
#89 opened Jul 12, 2021 by BJWiley233
Documentation for importing packed files
#71 opened Apr 15, 2021 by alexiswl
10
Fix https://cwl-utils.readthedocs.io/
#57 opened Feb 9, 2021 by nyue
7
expr refactor new feature: consolidate generated ExpressionTool/CommandLineTools
#49 opened Dec 2, 2020 by mr-c
expr refactor: download conformance tests and process & run them
#45 opened Nov 12, 2020 by mr-c
1 task
expr refactor: pickValue on a Workflow step input
#44 opened Nov 12, 2020 by mr-c
container image puller: consider using https://github.com/biowdl/prepull-singularity
#35 opened Sep 30, 2020 by mr-c
schema_salad.exceptions.ValidationExceptions parsing certain data structures
#31 opened Sep 4, 2020 by leipzig
@leipzig
12
document release process
#22 opened Jun 13, 2020 by mr-c
@illusional
3
Request: tool to replace simple docker references with digests
#19 opened Jun 10, 2020 by mr-c
4
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