Merge pull request nf-core#43 from nf-core/update-changelog-sampleshe…

…et-generation

CHANGELOG.md

@@ -13,6 +13,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - [PR #34](https://github.com/nf-core/detaxizer/pull/34) - Made preprocessing with fastp optional and added a parameter to turn on duplication removal (off as default, was on/not changeable in v1.0.0)
 - [PR #34](https://github.com/nf-core/detaxizer/pull/34) - Optionally the removed reads can now be written to the output folder
 - [PR #34](https://github.com/nf-core/detaxizer/pull/34) - Added optional classification of filtered and removed reads via kraken2
+- [PR #39](https://github.com/nf-core/detaxizer/pull/39) - Added generation of samplesheet for MAG, Taxprofiler
 
 #### Parameters
 

README.md

@@ -68,6 +68,11 @@ To see the results of an example test run with a full size dataset refer to the
 For more details about the output files and reports, please refer to the
 [output documentation](https://nf-co.re/detaxizer/output).
 
+Generated samplesheets from the directory `/downstream_samplesheets/` can be used for the pipelines:
+
+- [nf-core/mag](https://nf-co.re/mag)
+- [nf-core/taxprofiler](https://nf-co.re/taxprofiler)
+
 ## Credits
 
 nf-core/detaxizer was originally written by [Jannik Seidel](https://github.com/jannikseidelQBiC) at the [Quantitative Biology Center (QBiC)](http://qbic.life/).