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tools for adding mutations to existing .bam files, used for testing mutation callers
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jpfeil/bamsurgeon
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Bamsurgeon: tools for adding mutations to .bam files, used for testing mutation callers Please see doc/Manual.pdf for instructions and contact [email protected] with questions. Prerequisites: samtools/wgsim/tabix (https://github.com/samtools/samtools) bcftools (https://github.com/samtools/bcftools) pysam >= 0.8.1 (https://github.com/pysam-developers/pysam) bwa (http://bio-bwa.sourceforge.net/) velvet (http://www.ebi.ac.uk/~zerbino/velvet/) exonerate (http://www.ebi.ac.uk/~guy/exonerate/) picard tools >= 1.128 (https://github.com/broadinstitute/picard/releases/tag/1.128)
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tools for adding mutations to existing .bam files, used for testing mutation callers
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