Bump bioconda prefix to conda packages

Signed-off-by: Paolo Di Tommaso <[email protected]>
nextflow-io · May 19, 2024 · 87dfd9e · 87dfd9e
1 parent 2ec8849
commit 87dfd9e
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Showing 4 changed files with 4 additions and 4 deletions.
diff --git a/modules/fastqc/main.nf b/modules/fastqc/main.nf
@@ -2,7 +2,7 @@ params.outdir = 'results'
 
 process FASTQC {
     tag "FASTQC on $sample_id"
-    conda 'fastqc=0.12.1'
+    conda 'bioconda::fastqc=0.12.1'
     publishDir params.outdir, mode:'copy'
 
     input:

diff --git a/modules/index/main.nf b/modules/index/main.nf
@@ -1,7 +1,7 @@
 
 process INDEX {
     tag "$transcriptome.simpleName"
-    conda 'salmon=1.10.2'
+    conda 'bioconda::salmon=1.10.2'
 
     input:
     path transcriptome 

diff --git a/modules/multiqc/main.nf b/modules/multiqc/main.nf
@@ -1,7 +1,7 @@
 params.outdir = 'results'
 
 process MULTIQC {
-    conda 'multiqc=1.17'
+    conda 'bioconda::multiqc=1.17'
     publishDir params.outdir, mode:'copy'
 
     input:

diff --git a/modules/quant/main.nf b/modules/quant/main.nf
@@ -1,7 +1,7 @@
 
 process QUANT {
     tag "$pair_id"
-    conda 'salmon=1.10.2'
+    conda 'bioconda::salmon=1.10.2'
 
     input:
     path index