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54 Open 77 Closed
54 Open 77 Closed
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Issues list

Mixed-model in Limma enhancement New feature or request
#325 opened Oct 28, 2024 by KamilMaliszArdigen
@KamilMaliszArdigen
3
add module GPROFILER2
#323 opened Oct 25, 2024 by suzannejin
1 task
1
@roskamsh @caraiz2001
add module DESEQ2
#322 opened Oct 25, 2024 by suzannejin
1 task
@WackerO
2
add test data good first issue Good for newcomers
#321 opened Oct 25, 2024 by suzannejin
1 task
Incorporation of IHW correction into the pipeline enhancement New feature or request
#319 opened Oct 24, 2024 by KamilMaliszArdigen
@KamilMaliszArdigen
update rmarkdown notebook
#317 opened Oct 23, 2024 by suzannejin
1 task
@ctuni
add plot_differential
#316 opened Oct 23, 2024 by suzannejin
1 task
add plot_exploratory
#315 opened Oct 23, 2024 by suzannejin
1 task
@suzannejin
handle compability between study type and analysis pathway good first issue Good for newcomers
#314 opened Oct 23, 2024 by suzannejin
1 task
better handling of ext.args vs toolsheet args
#313 opened Oct 23, 2024 by suzannejin
1 task
better intertalk between params and toolsheet good first issue Good for newcomers
#312 opened Oct 23, 2024 by suzannejin
4 tasks
add module GSEA good first issue Good for newcomers
#311 opened Oct 23, 2024 by suzannejin
1 task
1
@thomas-tams
1
Restructure the way how the 'experimental' branch is called by main
#309 opened Oct 23, 2024 by suzannejin
2 tasks
update documentation documentation Improvements or additions to documentation good first issue Good for newcomers
#307 opened Oct 22, 2024 by suzannejin
4 tasks
https://nf-co.re/differentialabundance/1.5.0/docs/usage/#g should be the full name:gprofiler2, not just g bug Something isn't working
#305 opened Oct 22, 2024 by vmkalbskopf
deseq_lfc_threshold parameter is not working as intended. bug Something isn't working
#295 opened Oct 7, 2024 by erdikucuk
Gene sets in the shinyngs app enhancement New feature or request
#294 opened Oct 4, 2024 by Jeff-hard
For spike-in analysis, remove control features from outputs enhancement New feature or request
#277 opened Jun 4, 2024 by dshechter
Requests: Enhancements to DESeq2 csv outputs and PDF outputs enhancement New feature or request
#276 opened Jun 4, 2024 by dshechter
Provide a parameter to disable rmarkdown report creation in the differential abundance pipeline enhancement New feature or request
#275 opened May 24, 2024 by shreya-sharma20
2
Missing colour and hover labels in interactive report volcano plot bug Something isn't working
#270 opened May 21, 2024 by ajeffs
4
PosixFileAttributeView bug Something isn't working
#263 opened Apr 12, 2024 by nick-youngblut
Auto-format sample names enhancement New feature or request
#262 opened Apr 12, 2024 by nick-youngblut
2
Failed to publish file => double forward slashes bug Something isn't working
#261 opened Apr 12, 2024 by nick-youngblut
Error in TABULAR_TO_GSEA_CHIP bug Something isn't working
#258 opened Apr 9, 2024 by acpicornell
2
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