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60 Open 230 Closed
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Issues list

how to get prodigal to use more threads
#711 opened Oct 29, 2024 by Drob84761
--megahit_options doesnt work as intended bug Something isn't working
#709 opened Oct 29, 2024 by d4straub
Running BUSCO with your own database bug Something isn't working
#697 opened Oct 17, 2024 by Thomieh73
1
--host_fasta_bowtie2index path taken for bowtie -S output file bug Something isn't working
#694 opened Oct 16, 2024 by MeriamOs
2
Optional skipping of short-read input to Filtlong for large datasets enhancement New feature or request
#691 opened Oct 14, 2024 by ddomman
1
Generate taxprofiler samplesheet from mag
#687 opened Oct 10, 2024 by vagkaratzas
1
@vagkaratzas
Create a samplesheet for funcscan enhancement New feature or request
#686 opened Oct 10, 2024 by jasmezz
@jasmezz
1
Prokka: contig length too long - add option for --compliant mode enhancement New feature or request good first issue Good for newcomers
#677 opened Sep 27, 2024 by audy
6
convert_depths for co-assembly taking only average depth and not sample wise read depths for maxbin2 binning with solution bug Something isn't working
#663 opened Sep 5, 2024 by uel3
2
Consider metaMDBG as another long-read assembler enhancement New feature or request
#662 opened Sep 5, 2024 by jfy133
@muabnezor
1
Add nanoq as alternative for long-read filtering enhancement New feature or request
#661 opened Sep 5, 2024 by jfy133
@muabnezor
Add (meta)Flye for long-read only assembly enhancement New feature or request
#659 opened Sep 5, 2024 by jfy133
@muabnezor
Consider CarpeDeam for (ancient DNA) damage aware assembler enhancement New feature or request
#650 opened Aug 12, 2024 by jfy133
Option to skip DasTool unbinned contigs enhancement New feature or request
#649 opened Aug 6, 2024 by zackhenny
Update metaspades to 4.0.0 bug Something isn't working
#640 opened Jul 24, 2024 by elsherbini
1
@jfy133
1
Add module pyrodigal enhancement New feature or request
#624 opened Jun 3, 2024 by jasmezz
Enter at postbinning stage enhancement New feature or request
#623 opened Jun 3, 2024 by prototaxites
9
Allow Prodigal to create a gbk file instead of the gff enhancement New feature or request
#622 opened Jun 3, 2024 by amizeranschi
CAT_DB process has harcoded CAT subdirectory names bug Something isn't working
#611 opened Apr 18, 2024 by maxibor
1
Genome taxnomic classification with Sourmash enhancement New feature or request
#609 opened Apr 5, 2024 by prototaxites
3
Replace CheckM with CheckM2
#607 opened Mar 22, 2024 by CarsonJM
@dialvarezs
5
Improve documentation on the effects of completeness/contamination filters enhancement New feature or request
#606 opened Mar 22, 2024 by jfy133
add diamond support to mag WIP Work in progress
#604 opened Mar 19, 2024 by MatthewJM96
@MatthewJM96
Bins in CheckM summary do not match bins in bin depths summary bug Something isn't working
#603 opened Mar 17, 2024 by QingDAI0225
7
Error in executing PROKKA
#601 opened Mar 13, 2024 by anugos
9
ProTip! Exclude everything labeled bug with -label:bug.