You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
dRep takes a set of genomes, with CheckM data, and dereplicates them to produce a set of non-overlapping genomes at a specified ANI. As this is basically just pointing to certain MAGs as the representatives of clusters, the output could possibly be summarised by a column in the bin summary table: dRep. If the column says e.g. 95 and hence indicates the ANI, one could potentially run dRep multiple times. There is no existing nf-core module.
The text was updated successfully, but these errors were encountered:
I have a module for Galah that I wrote for a personal pipeline processing the output of mag, as well as a process that takes the busco_summary.tsv file and converts it to the format required by Galah to use the completeness/contamination information.
I had planned to add them to mag at some point, but haven't found time yet.
Description of feature
dRep takes a set of genomes, with CheckM data, and dereplicates them to produce a set of non-overlapping genomes at a specified ANI. As this is basically just pointing to certain MAGs as the representatives of clusters, the output could possibly be summarised by a column in the bin summary table:
dRep
. If the column says e.g.95
and hence indicates the ANI, one could potentially run dRep multiple times. There is no existing nf-core module.The text was updated successfully, but these errors were encountered: