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fix install nf-test
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maxulysse committed Oct 23, 2024
1 parent d355521 commit f42d82a
Showing 1 changed file with 5 additions and 10 deletions.
15 changes: 5 additions & 10 deletions .github/workflows/nf-test.yml
Original file line number Diff line number Diff line change
Expand Up @@ -21,9 +21,12 @@ concurrency:
cancel-in-progress: true

env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
NFT_VER: "0.9.0"
NXF_ANSI_LOG: false
NXF_SINGULARITY_CACHEDIR: ${{ github.workspace }}/.singularity
NXF_SINGULARITY_LIBRARYDIR: ${{ github.workspace }}/.singularity
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
NXF_VER: "24.04.4"

jobs:
install-nf-test:
Expand All @@ -32,7 +35,7 @@ jobs:
- name: Install nf-test
uses: nf-core/setup-nf-test@v1
with:
version: ${{ env.NFTEST_VER }}
version: ${{ env.NFT_VER }}


get-number-of-shards:
Expand Down Expand Up @@ -70,9 +73,6 @@ jobs:
profile: [conda, docker_self_hosted, singularity]
shard: ${{ fromJSON(needs.get-number-of-shards.outputs.shards) }}
env:
NXF_ANSI_LOG: false
NXF_VER: "24.04.4"
NFTEST_VER: "0.9.0"
TOTAL_SHARDS: ${{ needs.get-number-of-shards.outputs.total_shards }}
SENTIEON_LICENSE_MESSAGE: ${{ secrets.SENTIEON_LICENSE_MESSAGE }}
SENTIEON_ENCRYPTION_KEY: ${{ secrets.SENTIEON_ENCRYPTION_KEY }}
Expand All @@ -94,11 +94,6 @@ jobs:
with:
version: ${{ env.NXF_VER }}

- name: Install nf-test
uses: nf-core/setup-nf-test@v1
with:
version: ${{ env.NFTEST_VER }}

- name: Setup apptainer
if: matrix.profile == 'singularity'
uses: eWaterCycle/setup-apptainer@main
Expand Down

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