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5127 new module xenium ranger #6826

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@khersameesh24 khersameesh24 commented Oct 22, 2024

PR checklist

Closes #XXX

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Emit the versions.yml file.
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@khersameesh24 khersameesh24 requested a review from a team as a code owner October 22, 2024 14:07
@khersameesh24 khersameesh24 requested review from vagkaratzas and removed request for a team October 22, 2024 14:07
@mashehu mashehu changed the base branch from 5127-new-module-xenium-ranger to master October 22, 2024 14:10
@mashehu mashehu requested a review from a team as a code owner October 22, 2024 14:10
@khersameesh24 khersameesh24 linked an issue Oct 22, 2024 that may be closed by this pull request
4 tasks
@@ -1,6 +1,6 @@
repos:
- repo: https://github.com/pre-commit/mirrors-prettier
rev: "v3.1.0"
rev: "v4.0.0-alpha.8"
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Suggested change
rev: "v4.0.0-alpha.8"
rev: "v3.1.0"

please keep the original version. We want to use the currently stable version of prettier.

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Hi Matthias, I am getting a lot of issues with unstable checksums although the same tests when run on my local system run smoothly. Not sure how to fix this

@khersameesh24 khersameesh24 self-assigned this Oct 26, 2024
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new module: Xenium Ranger
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