add tests for fq2bam #6902
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add tests for fq2bam #6902
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GallVp
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GallVp
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Oct 30, 2024
| @@ -644,6 +644,12 @@ jobs: | |||
| path: modules/nf-core/parabricks/fq2bammeth | |||
| - profile: singularity | |||
| path: modules/nf-core/parabricks/fq2bammeth | |||
| - profile: conda | |||
GallVp
reviewed
Oct 30, 2024
| @@ -45,6 +40,11 @@ input: | |||
| type: file | |||
| description: reference BWA index | |||
| pattern: "*.{amb,ann,bwt,pac,sa}" | |||
| - - interval_file: | |||
GallVp
reviewed
Oct 30, 2024
| input[0] = [ | ||
| [ id:'test', single_end:false ], // meta map | ||
| [ | ||
| file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/fastq/test_1.fastq.gz', checkIfExists: true), |
GallVp
approved these changes
Oct 30, 2024
|
Hi @sateeshperi I'm happy with it and confirm that it runs on AWS/batch. Please have a look and merge. |
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