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add tests for fq2bam #6902
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add tests for fq2bam #6902
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@@ -644,6 +644,12 @@ jobs: | |||
path: modules/nf-core/parabricks/fq2bammeth | |||
- profile: singularity | |||
path: modules/nf-core/parabricks/fq2bammeth | |||
- profile: conda |
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Removed these from test.
@@ -45,6 +40,11 @@ input: | |||
type: file | |||
description: reference BWA index | |||
pattern: "*.{amb,ann,bwt,pac,sa}" | |||
- - interval_file: |
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Used nf-core --fix lint
input[0] = [ | ||
[ id:'test', single_end:false ], // meta map | ||
[ | ||
file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/fastq/test_1.fastq.gz', checkIfExists: true), |
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Added a test for PE data
Hi @sateeshperi I'm happy with it and confirm that it runs on AWS/batch. Please have a look and merge. |
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