3257 - Add linkify version to fix bioconda dependencies #97
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name: Update Textual snapshots from a comment | |
on: | |
issue_comment: | |
types: [created] | |
jobs: | |
update-snapshots: | |
# Only run if comment is on a PR with the main repo, and if it contains the magic keywords | |
if: > | |
contains(github.event.comment.html_url, '/pull/') && | |
contains(github.event.comment.body, '@nf-core-bot update snapshots') && | |
github.repository == 'nf-core/tools' | |
runs-on: ubuntu-latest | |
steps: | |
# Use the @nf-core-bot token to check out so we can push later | |
- uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4 | |
with: | |
token: ${{ secrets.nf_core_bot_auth_token }} | |
# indication that the command is running | |
- name: React on comment | |
uses: peter-evans/create-or-update-comment@71345be0265236311c031f5c7866368bd1eff043 # v4 | |
with: | |
comment-id: ${{ github.event.comment.id }} | |
reactions: eyes | |
# Action runs on the issue comment, so we don't get the PR by default | |
# Use the gh cli to check out the PR | |
- name: Checkout Pull Request | |
run: gh pr checkout ${{ github.event.issue.number }} | |
env: | |
GITHUB_TOKEN: ${{ secrets.nf_core_bot_auth_token }} | |
# Install dependencies and run pytest | |
- name: Set up Python | |
uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5 | |
with: | |
python-version: "3.12" | |
cache: "pip" | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip -r requirements-dev.txt | |
pip install -e . | |
- name: Run pytest to update snapshots | |
id: pytest | |
run: | | |
python3 -m pytest tests/test_create_app.py --snapshot-update --color=yes --durations=0 | |
continue-on-error: true | |
# indication that the run has finished | |
- name: react if finished succesfully | |
if: steps.pytest.outcome == 'success' | |
uses: peter-evans/create-or-update-comment@71345be0265236311c031f5c7866368bd1eff043 # v4 | |
with: | |
comment-id: ${{ github.event.comment.id }} | |
reactions: "+1" | |
- name: Commit & push changes | |
id: commit-and-push | |
if: steps.pytest.outcome == 'failure' | |
run: | | |
git config user.email "[email protected]" | |
git config user.name "nf-core-bot" | |
git config push.default upstream | |
git add . | |
git status | |
git commit -m "[automated] Update Textual snapshots" | |
git push | |
- name: react if snapshots were updated | |
id: react-if-updated | |
if: steps.commit-and-push.outcome == 'success' | |
uses: peter-evans/create-or-update-comment@71345be0265236311c031f5c7866368bd1eff043 # v4 | |
with: | |
comment-id: ${{ github.event.comment.id }} | |
reactions: hooray | |
- name: react if snapshots were not updated | |
if: steps.commit-and-push.outcome == 'failure' | |
uses: peter-evans/create-or-update-comment@71345be0265236311c031f5c7866368bd1eff043 # v4 | |
with: | |
comment-id: ${{ github.event.comment.id }} | |
reactions: confused | |
- name: react if snapshots were not updated | |
if: steps.commit-and-push.outcome == 'failure' | |
uses: peter-evans/create-or-update-comment@71345be0265236311c031f5c7866368bd1eff043 # v4 | |
with: | |
issue-number: ${{ github.event.issue.number }} | |
body: | | |
@${{ github.actor }} I tried to update the snapshots, but it didn't work. Please update them manually. |