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@ratschlab

Biomedical Informatics at ETH Zurich

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  1. RGAN RGAN Public

    Recurrent (conditional) generative adversarial networks for generating real-valued time series data.

    Python 641 182

  2. SOM-VAE SOM-VAE Public

    TensorFlow implementation of the SOM-VAE model as described in https://arxiv.org/abs/1806.02199

    Python 190 32

  3. GP-VAE GP-VAE Public

    TensorFlow implementation for the GP-VAE model described in https://arxiv.org/abs/1907.04155

    Python 126 27

  4. metagraph metagraph Public

    Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

    C++ 111 17

  5. spladder spladder Public

    Tool for the detection and quantification of alternative splicing events from RNA-Seq data.

    Python 103 33

  6. dpsom dpsom Public

    Code associated with ACM-CHIL 21 paper 'T-DPSOM - An Interpretable Clustering Method for Unsupervised Learning of Patient Health States'

    Python 66 16

Repositories

Showing 10 of 109 repositories
  • readfish Public Forked from LooseLab/readfish

    CLI tool for flexible and fast adaptive sampling on ONT sequencers

    ratschlab/readfish’s past year of commit activity
    Python 0 GPL-3.0 35 0 0 Updated Oct 30, 2024
  • circEWS Public

    circEWS public code

    ratschlab/circEWS’s past year of commit activity
    Python 60 MIT 24 4 0 Updated Oct 30, 2024
  • tools-project-archives Public

    A commandline tool to create and handle project archives

    ratschlab/tools-project-archives’s past year of commit activity
    Python 0 MIT 1 5 2 Updated Oct 29, 2024
  • metagraph Public

    Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

    ratschlab/metagraph’s past year of commit activity
    C++ 111 GPL-3.0 17 10 13 Updated Oct 26, 2024
  • ratschlab/phd-thesis-amir’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 26, 2024
  • nanotron-petagraph Public Forked from huggingface/nanotron

    Minimalistic large language model 3D-parallelism training - Forked to train Petagraph

    ratschlab/nanotron-petagraph’s past year of commit activity
    Python 0 Apache-2.0 118 0 0 Updated Oct 9, 2024
  • spladder Public

    Tool for the detection and quantification of alternative splicing events from RNA-Seq data.

    ratschlab/spladder’s past year of commit activity
    Python 103 33 31 0 Updated Oct 9, 2024
  • sshash Public Forked from jermp/sshash

    A compressed, associative, exact, and weighted dictionary for k-mers.

    ratschlab/sshash’s past year of commit activity
    C++ 0 MIT 17 0 1 Updated Aug 25, 2024
  • gromics Public

    Collection of tools and utilities for *omics analyses

    ratschlab/gromics’s past year of commit activity
    Python 1 MIT 0 0 1 Updated Aug 5, 2024
  • RMS Public

    RMS public code

    ratschlab/RMS’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jul 29, 2024

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