Add more tests for filter_obs() #505
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name: Python package | |
on: | |
push: | |
branches: [main] | |
pull_request: | |
branches: [main] | |
schedule: | |
- cron: "0 5 1,15 * *" | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: ["3.10", "3.12"] | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install tools | |
run: python -m pip install --upgrade pip | |
- name: Install dependencies | |
run: > | |
pip install | |
".[test]" | |
git+https://github.com/bioFAM/mofapy2 | |
git+https://github.com/scverse/mudata | |
- name: List dependencies | |
run: | | |
pip list | |
- name: Lint with flake8 | |
run: | | |
# stop the build if there are Python syntax errors or undefined names | |
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
- name: Test with pytest | |
run: | | |
pytest |