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biocmask
: data masks for S4 objects, especially SummarizedExperiment
enhancement
#16
opened Sep 4, 2024 by
mikelove
tidyomics project-wide challenge: add more cross-package tutorials
#14
opened Feb 15, 2024 by
mikelove
plyranges
: add support for min.gapwidth
to reduce_ranges
enhancement
#12
opened Nov 11, 2023 by
mikelove
Example of scATAC-seq pseudobulk analysis for differential accessibility testing
documentation
Improvements or additions to documentation
#11
opened Oct 26, 2023 by
jeremymsimon
plyranges
: facilitate adding metadata columns via join_mcols_*
enhancement
#10
opened Sep 23, 2023 by
mikelove
use New feature or request
pillar
to add aesthetics to the columns of the tibble
interface of tidySCE
, tidyseurat
, tidySE
enhancement
#9
opened Aug 25, 2023 by
stemangiola
Write/teach workshop on bootRanges
documentation
Improvements or additions to documentation
#7
opened Aug 21, 2023 by
mikelove
modernize tidy transcriptomics and genomics with dplyr > 1.0.0 and new tidyr
enhancement
New feature or request
#6
opened Aug 15, 2023 by
stemangiola
Example of ATAC-seq processing combining plyranges and tidybulk/tidySummarizedExperiment
documentation
Improvements or additions to documentation
good first issue
Good for newcomers
#1
opened Aug 15, 2023 by
mikelove
plyranges
: join_overlap
but also include distance column
enhancement
#2
opened Aug 3, 2023 by
mikelove
New package idea, facilitate easily: genomic ranges |> filter_by_overlaps(window) |> plotgardener or Gviz
good first issue
Good for newcomers
#5
opened Jul 27, 2023 by
mikelove
any of the Improvements or additions to documentation
good first issue
Good for newcomers
plyranges
"good-first-issue" issues
documentation
#3
opened Jul 26, 2023 by
mikelove
Speed up New feature or request
group_by
operations in plyranges
enhancement
#4
opened Jul 21, 2023 by
mikelove
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