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nf-core AWS full size tests #94

nf-core AWS full size tests

nf-core AWS full size tests #94

Workflow file for this run

name: nf-core AWS full size tests
# This workflow is triggered on PRs opened against the master branch.
# It can be additionally triggered manually with GitHub actions workflow dispatch button.
# It runs the -profile 'test_full' on AWS batch
on:
pull_request:
branches:
- master
workflow_dispatch:
pull_request_review:
types: [submitted]
jobs:
run-platform:
name: Run AWS full tests
# run only if the PR is approved by at least 2 reviewers and against the master branch or manually triggered
if: github.repository == 'nf-core/mag' && github.event.review.state == 'approved' && github.event.pull_request.base.ref == 'master' || github.event_name == 'workflow_dispatch'
runs-on: ubuntu-latest
steps:
- uses: octokit/[email protected]
if: github.event_name != 'workflow_dispatch'
id: check_approvals
with:
route: GET /repos/${{ github.repository }}/pulls/${{ github.event.pull_request.number }}/reviews?per_page=100
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
- id: test_variables
if: github.event_name != 'workflow_dispatch'
run: |
JSON_RESPONSE='${{ steps.check_approvals.outputs.data }}'
CURRENT_APPROVALS_COUNT=$(echo $JSON_RESPONSE | jq -c '[.[] | select(.state | contains("APPROVED")) ] | length')
test $CURRENT_APPROVALS_COUNT -ge 2 || exit 1 # At least 2 approvals are required
- name: Launch workflow via Seqera Platform
uses: seqeralabs/action-tower-launch@v2
with:
workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }}
access_token: ${{ secrets.TOWER_ACCESS_TOKEN }}
compute_env: ${{ secrets.TOWER_COMPUTE_ENV }}
revision: ${{ github.sha }}
workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/mag/work-${{ github.sha }}
parameters: |
{
"hook_url": "${{ secrets.MEGATESTS_ALERTS_SLACK_HOOK_URL }}",
"outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/mag/results-${{ github.sha }}"
}
profiles: test_full
- uses: actions/upload-artifact@v4
with:
name: Seqera Platform debug log file
path: |
seqera_platform_action_*.log
seqera_platform_action_*.json