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Standardises GTDB execution and allow pre-uncompressed GTDB input #477

Merged
merged 11 commits into from
Aug 10, 2023
Merged

Standardises GTDB execution and allow pre-uncompressed GTDB input #477

merged 11 commits into from
Aug 10, 2023
+73 −46

Commits on Jul 13, 2023

  1. First pass

    @jfy133
    jfy133 committed Jul 13, 2023
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  2. Merge branch 'dev' into improve-database-handling

    @jfy133
    jfy133 authored Jul 13, 2023
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  3. Fix linting

    @jfy133
    jfy133 committed Jul 13, 2023
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  4. Manual sync with dev

    @jfy133
    jfy133 committed Jul 13, 2023
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  5. Add debugging to try and work out why GTDBTK not being executed

    @jfy133
    jfy133 committed Jul 13, 2023
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Commits on Jul 29, 2023

  1. Merge branch 'dev' into improve-database-handling

    @jfy133
    jfy133 committed Jul 29, 2023
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  2. Harshil align on new skip_gtdbtk flag

    @jfy133
    jfy133 committed Jul 29, 2023
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  3. Merge branch 'dev' into improve-database-handling

    @jfy133
    jfy133 committed Jul 29, 2023
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  4. Make GTDBTK explicitly optional, and more flexible with input databases

    @jfy133
    jfy133 committed Jul 29, 2023
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Commits on Jul 30, 2023

  1. Update nextflow.config

    @jfy133
    jfy133 authored Jul 30, 2023
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Commits on Aug 7, 2023

  1. Updated gtdb_db version to r214

    @CarsonJM
    CarsonJM committed Aug 7, 2023
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