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Release PR for 3.0.3 #656

Merged
merged 38 commits into from
Aug 27, 2024
Merged

Release PR for 3.0.3 #656

merged 38 commits into from
Aug 27, 2024

Commits on Jul 4, 2024

  1. Post release bump

    @jfy133
    jfy133 committed Jul 4, 2024
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  2. Merge pull request #636 from nf-core/postreleasebump 

    Post release version bump
    @jfy133
    jfy133 authored Jul 4, 2024
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Commits on Jul 18, 2024

  1. only make bin depths plots for cases w >2 samples and >2 bins

    @d-callan
    d-callan committed Jul 18, 2024
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Commits on Aug 1, 2024

  1. Update gtdbtk.nf

    @prototaxites
    prototaxites authored Aug 1, 2024
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  2. Update gtdbtk.nf

    @prototaxites
    prototaxites authored Aug 1, 2024
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Commits on Aug 2, 2024

  1. Update CHANGELOG.md

    @prototaxites
    prototaxites authored Aug 2, 2024
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  2. Fix code that combines assembly and sample IDs for checking

    @prototaxites
    prototaxites committed Aug 2, 2024
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  3. Update changelog

    @prototaxites
    prototaxites committed Aug 2, 2024
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Commits on Aug 3, 2024

  1. Merge pull request #646 from prototaxites/fix_gtdb_dir_input 

    Fix GTDB-Tk directory input
    @jfy133
    jfy133 authored Aug 3, 2024
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Commits on Aug 5, 2024

  1. Merge branch 'dev' into fix_match

    @prototaxites
    prototaxites authored Aug 5, 2024
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Commits on Aug 6, 2024

  1. Update CHANGELOG.md 

    Co-authored-by: James A. Fellows Yates <[email protected]>
    @prototaxites @jfy133
    prototaxites and jfy133 authored Aug 6, 2024
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  2. Update subworkflows/local/utils_nfcore_mag_pipeline/main.nf 

    Co-authored-by: James A. Fellows Yates <[email protected]>
    @prototaxites @jfy133
    prototaxites and jfy133 authored Aug 6, 2024
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  3. Update CHANGELOG.md 

    Co-authored-by: James A. Fellows Yates <[email protected]>
    @prototaxites @jfy133
    prototaxites and jfy133 authored Aug 6, 2024
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  4. Merge pull request #648 from prototaxites/fix_match 

    Fix match check of assembly and sample IDs
    @prototaxites
    prototaxites authored Aug 6, 2024
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Commits on Aug 9, 2024

  1. clarify when clustered heatmaps will be produced as outputs

    @d-callan
    d-callan committed Aug 9, 2024
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  2. add bug fix 639 to changelog

    @d-callan
    d-callan committed Aug 9, 2024
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Commits on Aug 10, 2024

  1. [automated] Fix code linting

    @nf-core-bot
    nf-core-bot committed Aug 10, 2024
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Commits on Aug 15, 2024

  1. Merge branch 'dev' into fix-638

    @jfy133
    jfy133 authored Aug 15, 2024
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  2. Add @d-callan and other recent code contributors

    @jfy133
    jfy133 authored Aug 15, 2024
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  3. Add other third wave of developer leads to authors

    @jfy133
    jfy133 authored Aug 15, 2024
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  4. [automated] Fix code linting

    @nf-core-bot
    nf-core-bot committed Aug 15, 2024
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  5. Update subworkflows/local/depths.nf

    @jfy133
    jfy133 authored Aug 15, 2024
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  6. Update LICENSE to include more recent contributors

    @jfy133
    jfy133 authored Aug 15, 2024
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Commits on Aug 16, 2024

  1. Merge pull request #639 from nf-core/fix-638 

    Fix #638 [MAG_DEPTHS_PLOT fails if only a single bin is produced]
    @jfy133
    jfy133 authored Aug 16, 2024
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  2. replaced old MultiQC containers with nf-core/ubuntu:20.04

    @harper357
    harper357 committed Aug 16, 2024
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Commits on Aug 20, 2024

  1. Update CHANGELOG

    @jfy133
    jfy133 authored Aug 20, 2024
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  2. Update nextflow_schema.json 

    Remove "=" sign from parameter value assignment
    @amizeranschi
    amizeranschi authored Aug 20, 2024
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  3. Merge pull request #652 from nf-core/amizeranschi-patch-1 

    Update nextflow_schema.json
    @amizeranschi
    amizeranschi authored Aug 20, 2024
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Commits on Aug 21, 2024

  1. Merge pull request #651 from harper357/container_sync 

    Change unnecessary MultiQC containers to nf-core/ubuntu:20.04
    @jfy133
    jfy133 authored Aug 21, 2024
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  2. Fix GUNC overwriting of raw output files

    @jfy133
    jfy133 committed Aug 21, 2024
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Commits on Aug 22, 2024

  1. Merge pull request #653 from nf-core/fix-gunc-overwriting 

    Fix gunc overwriting of raw and checkm files
    @jfy133
    jfy133 authored Aug 22, 2024
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  2. Remove unused module

    @jfy133
    jfy133 committed Aug 22, 2024
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  3. Fix linting

    @jfy133
    jfy133 committed Aug 22, 2024
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  4. Remove reference to CUSTOM_DUMPSOFTWAREVERSONS in base.config

    @jfy133
    jfy133 committed Aug 22, 2024
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  5. Merge pull request #654 from nf-core/remove-old-module 

    Remove unused module
    @jfy133
    jfy133 authored Aug 22, 2024
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  6. Dump versions for release

    @jfy133
    jfy133 committed Aug 22, 2024
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  7. Merge pull request #655 from nf-core/bump-version 

    Bump versions for release
    @jfy133
    jfy133 authored Aug 22, 2024
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Commits on Aug 27, 2024

  1. Update CHANGELOG.md

    @jfy133
    jfy133 authored Aug 27, 2024
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